1 miyasaka laboratory yusuke satoh david w. mccamant et al, science, 2005, 310, 1006-1009 structural...
TRANSCRIPT
![Page 1: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/1.jpg)
1
Miyasaka Laboratory
Yusuke Satoh
David W. McCamant et al, Science, 2005, 310, 1006-1009
Structural observation of the primary isomerization in vision with femtoseco
nd-stimulated Raman
![Page 2: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/2.jpg)
2
VisionThe light reaches the retina through eyes and is changed into signal in retina.Signals are sent to our brains.
Scheme 1. Structure of eye
(Ref. http://www.kiriya-chem.co.jp/q&a/q52.html)
![Page 3: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/3.jpg)
3
Retinal
Scheme 2. Structure of Rhodopsin
Opsin is a protein of 7 spiral structures.
A chromophore inside Opsin is Retinal.
11-Cis Retinal changes into all-trans-retinal by light irradiation.
Signal is sent to the optic nerve.
(Ref. http://www.spring8.or.jp/j/user_info/sp8-info/data/5-6-2k/5-6-2k-3-p394.pdf)
NH
NHh
11-cis retinal all-trans retinal
![Page 4: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/4.jpg)
4
Past research of retinal
Table 1 Fluorescence lifetime and Transient absorption spectroscopy of retinal
Ref. Chem. Phys. Lett., 2001, 334, 271Science, 1991, 100, 14526
Transient absorption measurement and time-resolved fluorescence detection of 11-cis Retinal ~ 200 fs lifetime of the excited state reported.
Fluorescence lifetime Transient absorption spectroscopy
retinal 200 300 fs~ 200 fs
![Page 5: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/5.jpg)
5
Motivation
But fluorescence and electronic absorption spectra do not provide direct information of the molecular structure.
A new time-resolved Raman spectroscopy method is necessary in order to elucidate the dynamics of this isomerization reaction and factors regulating this rapid structural change.
![Page 6: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/6.jpg)
6
Contents
・ Introduction
・ Experiment
・ Result and Discussion
・ Summary
![Page 7: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/7.jpg)
7
Principle of Spotaneous Raman scattering
Stokes shift Anti-stokes shift
Virtual excited state
Ground state
Raman spectroscopy has been used for the identification of the chemical bond and for the determination of the molecular structure.
Scheme 3. Mechanism of SpotaneousRaman scattering
0± : Raman scattering
: Raman shift
0 0 - 0 +0
![Page 8: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/8.jpg)
8
Time-resolved Raman spectroscopy
Pump pulse
Sample
Detector
Intermediate
Scheme. 4 Time-resolved Raman spectroscopy
The simple application of femtosecond laser pulse does not provide detailed information of vibrational spectra.
Probe pulse
Delay time
0
Raman scattering
0 -
Frequency / cm-1
![Page 9: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/9.jpg)
9
Resonance Raman and Stimulated Raman
Excited state
Ground state
0 0 -
Resonance Raman Stimulated Raman
Scheme. 5 Resonance Raman and Stimulated Raman
Virtual excited state
0
0 -
(narrow)
+ (0 - (broad)
![Page 10: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/10.jpg)
10
Stimulated Raman spectroscopy
Fig. 1. Stimulated Raman spectroscopy (Ref. Rev. Sci. Instrum., 2004, 75, 4971)
![Page 11: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/11.jpg)
11
Stimulated Raman system
Fig. 2 Stimulated Raman spectroscopy system(Ref. Rev. Sci. Instrum., 2004, 75, 4971)
Excited pulse: 500 nm, 30 fs fwhmRaman pump: 805 nm, 3 ps fwhmRaman probe: 830 ~ 960 nm, 20 fs fwhm
![Page 12: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/12.jpg)
12
Structures of 11-cis Retinal and all-trans Retinal
NH
NHh
11-cis Retinal all-trans Retinal
11-Cis Retinal change into all-trans Retinal by light irradiation.
Fig. 3 Structure of 11-cis Retinal and all-trans Retinal
![Page 13: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/13.jpg)
13
Raman spectra of ground-state Retinal
Fig. 4 Raman spectra of ground-state of 11-cis Retinal(bottom) and all-trans Retinal(top)
・ Raman spectra of 11-cis Retinal(bottom)
1548 cm-1 ・・・ C=C stretch
1100 ~ 1300 cm-1 ・・・ C-C single bond stretch and C-H rocking modes
969 cm-1 ・・・ hydrogen-out-of-plane(HOOP) wagging motion of the C11 and C12 hydrogens
・ Raman spectra of all-trans Retinal(top)
920, 875, and 850 cm-1 ・・・ C11-H, C10-H, and
C12-H wagging
mode
hydrogen-out-of-plane(HOOP):水素の面外変角運動 rocking mode: 横ゆれ変角運動 wagging mode: 縦ゆれ変角運動
![Page 14: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/14.jpg)
14
Time-resolved Raman spectra of Retinal
Fig. 5 Time-resolved Raman spectra of Retinal(200 fs ~ 1 ps) and Raman spectra of ground state of 11-cis retinal(bottom) and all-trans retinal(top)
The dispersive HOOP features evolve on the same time scale as the finger-print bands into the expected three positive features of the Bathorhodopsin spectrum.
These data show that there is considerable reactive evolution on the ground-state surface from 200 fs to 1 ps.
![Page 15: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/15.jpg)
15
Time Profile of C10-H,C11-H and C12-Hhydrogen wagging frequencies
Fig. 6 Time profile of C10-H, C11-H and C12-H
hydrogen wagging frequency
The HOOP frequency increase by 100 cm-1 with 325 fs time constant.
![Page 16: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/16.jpg)
16
Fig. 7 Retinal chromophore structures for reactant
rhodopsin and for photorhodopsin and
bathorhodopsin that reproduce the observed
hydrogen wagging frequencies.
Structures of Retinal, Photorhodopsin and Bathorhodopsin
The Bathorhodopsin structure is twisted by –144° about the C11=C12 and by 31°about the C12–C13 bond.
The Photorhodopsin structure is more highly distorted, in particular about the C9=C
10 (45°), C10–C11 (25°), and C11=C12 (–110°) bonds.
With these larger twists, the overall shape of retinal is much more like that of 11-cis Rhodopsin than all-trans Bathorhodopsin,
![Page 17: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/17.jpg)
17
Theoretical and experimental hydrogen wagging frequencies
Fig. 8 Theoretical and experimental hydrogen wagging frequencies for the Photo and Bathorhodopsin structures
Caluculated frequency for Photorhodopsin structure show good agreement with experimental data for the C10-H,C11-H modes.
Vibrational calculations for the Bathorhodopsin structure yielded features in excellent agreement with experimental data, except for an underestimated C11–H wagging frequency.
![Page 18: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/18.jpg)
18
The isomerization coordinate for the primary event in vision
Fig. 9 Multidimensional representation of the isomerization coordinate for the primary event in vision
Excited-state of 11-cis Retinal carry the system toward a conical intersection in ~ 50 fs.
From 200 fs to 1 ps , Photorhdopsin changes into Bathorhodopsin on the ground-state surface.
![Page 19: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/19.jpg)
19
Summary
・ Excited-state decay (200 fs) through a conical intersection is mediated largely by fast HOOP motion.
・ By 1 ps, vibrational cooling has narrowed, thereby completing the transformation to Bathorhodopsin.
![Page 20: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/20.jpg)
20
Stimulated Raman spectroscopy
Fig. 1 Mechanism of stimulated Raman spectroscopy
Amplitude of coherent vibration induced by Raman and probe pulse
Heterodyne detection yields a gain feature on top of the probe envelope in the energy domain shifted in energy relative to the Raman pulse according to the frequency of the vibration.
①
①
Stimulated Raman spectroscopy is obtained by this method.
![Page 21: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/21.jpg)
21
Retinal
Scheme 2. Structure of Rhodopsin
Opsin is a protein with 7 spiral structures.
A chromophore inside Opsin is Retinal.
11-cis retinal changes into all-trans-retinal by light irradiation.
Signal is sent to the optic nerve.
(Ref. http://www.kiriya-chem.co.jp/q&a/q52.html)
![Page 22: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/22.jpg)
22
Feynman diagram
Feynman diagram
![Page 23: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/23.jpg)
23
Photoisomerization reaction of Rhodopsin
Photoisomerization reaction of Rhodopsin
![Page 24: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/24.jpg)
24
Principle of Raman scattering
Scheme 3. Mechanism of Raman scattering
0± : Raman scattering
: Raman shiftRaman spectroscopy has been used for the identification of the chemical bond and for the determination of the molecular structure.
(Ref. http://www.natc.co.jp/bunseki/lr.html)
![Page 25: 1 Miyasaka Laboratory Yusuke Satoh David W. McCamant et al, Science, 2005, 310, 1006-1009 Structural observation of the primary isomerization in vision](https://reader030.vdocuments.us/reader030/viewer/2022032606/56649e915503460f94b97498/html5/thumbnails/25.jpg)
25
Wagging mode and Rocking mode